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      <link:roleType id="SummaryOfSignificantAccountingPoliciesPolicies" roleURI="http://www.wholefoodsmarket.com/role/SummaryOfSignificantAccountingPoliciesPolicies">
        <link:definition>2225201 - Disclosure - Summary of Significant Accounting Policies (Policies)</link:definition>
        <link:usedOn>link:presentationLink</link:usedOn>
        <link:usedOn>link:calculationLink</link:usedOn>
        <link:usedOn>link:definitionLink</link:usedOn>
      </link:roleType>
    </xsd:appinfo>
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  <xsd:element id="wfm_CommonStockCapitalSharesReservedForFutureIssuanceEmployeeStockPurchasePlan" name="CommonStockCapitalSharesReservedForFutureIssuanceEmployeeStockPurchasePlan" nillable="true" substitutionGroup="xbrli:item" type="xbrli:sharesItemType" xbrli:periodType="instant" />
  <xsd:element abstract="true" id="wfm_ComprehensiveIncomeDisclosureAbstract" name="ComprehensiveIncomeDisclosureAbstract" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_CostOfGoodsSoldAndOccupancyCosts" name="CostOfGoodsSoldAndOccupancyCosts" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_CostOfGoodsSoldAndOccupancyCostsMember" name="CostOfGoodsSoldAndOccupancyCostsMember" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_DeferredLeaseLiabilities" name="DeferredLeaseLiabilities" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="credit" xbrli:periodType="instant" />
  <xsd:element abstract="true" id="wfm_DefiniteLivedContractBasedMember" name="DefiniteLivedContractBasedMember" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_DefiniteLivedMarketingRelatedAndOtherMember" name="DefiniteLivedMarketingRelatedAndOtherMember" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_DevelopmentCostsOfNewLocations" name="DevelopmentCostsOfNewLocations" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="credit" xbrli:periodType="duration" />
  <xsd:element id="wfm_DirectStoreExpenses" name="DirectStoreExpenses" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_DirectStoreExpensesMember" name="DirectStoreExpensesMember" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_DividendsPerCommonShareAbstract" name="DividendsPerCommonShareAbstract" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_DocumentAndEntityInformationAbstract" name="DocumentAndEntityInformationAbstract" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_FiniteAndIndefiniteLivedIntangibleAssetsByMajorClassAxis" name="FiniteAndIndefiniteLivedIntangibleAssetsByMajorClassAxis" nillable="true" substitutionGroup="xbrldt:dimensionItem" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_FiniteAndIndefiniteLivedIntangibleAssetsGross" name="FiniteAndIndefiniteLivedIntangibleAssetsGross" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="instant" />
  <xsd:element abstract="true" id="wfm_FiniteAndIndefiniteLivedIntangibleAssetsLineItems" name="FiniteAndIndefiniteLivedIntangibleAssetsLineItems" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_FiniteAndIndefiniteLivedIntangibleAssetsMajorClassNameDomain" name="FiniteAndIndefiniteLivedIntangibleAssetsMajorClassNameDomain" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_FutureAmortizationExpenseLineItems" name="FutureAmortizationExpenseLineItems" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_IncreaseDecreaseInDeferredLeaseLiabilities" name="IncreaseDecreaseInDeferredLeaseLiabilities" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_IndefiniteLivedContractBasedMember" name="IndefiniteLivedContractBasedMember" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_IssuanceOfCommonStockSharesPursuantToTMStockPlans" name="IssuanceOfCommonStockSharesPursuantToTMStockPlans" nillable="true" substitutionGroup="xbrli:item" type="xbrli:sharesItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_IssuanceOfCommonStockValuePursuantToTMStockPlans" name="IssuanceOfCommonStockValuePursuantToTMStockPlans" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="credit" xbrli:periodType="duration" />
  <xsd:element id="wfm_LongTermInvestmentAverageEffectiveMaturityPeriod" name="LongTermInvestmentAverageEffectiveMaturityPeriod" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_MaximumNumberOfYearsInformationRequiredToComputeExpectedLife" name="MaximumNumberOfYearsInformationRequiredToComputeExpectedLife" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_MaximumPeriodsOfHistoricalVolatilityUsedToComputeExpectedVolatility" name="MaximumPeriodsOfHistoricalVolatilityUsedToComputeExpectedVolatility" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_MinimumNumberOfYearsInformationUsedToComputeExpectedLife" name="MinimumNumberOfYearsInformationUsedToComputeExpectedLife" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_MinimumPeriodsOfHistoricalVolatilityUsedToComputeExpectedVolatility" name="MinimumPeriodsOfHistoricalVolatilityUsedToComputeExpectedVolatility" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_MunicipalNotesBondsMember" name="MunicipalNotesBondsMember" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_NumberOfOperatingSegments" name="NumberOfOperatingSegments" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="instant" />
  <xsd:element id="wfm_NumberOfRelatedParties" name="NumberOfRelatedParties" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_NumberOfReportableSegments" name="NumberOfReportableSegments" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="instant" />
  <xsd:element id="wfm_NumberOfTranchesInWhichExpectedLifeIsComputed" name="NumberOfTranchesInWhichExpectedLifeIsComputed" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="instant" />
  <xsd:element id="wfm_NumberOfWeeksInFirstQuarter" name="NumberOfWeeksInFirstQuarter" nillable="true" substitutionGroup="xbrli:item" type="us-types:durationStringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_NumberOfWeeksInFiscalYear" name="NumberOfWeeksInFiscalYear" nillable="true" substitutionGroup="xbrli:item" type="us-types:durationStringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_NumberOfWeeksInSecondQuarter" name="NumberOfWeeksInSecondQuarter" nillable="true" substitutionGroup="xbrli:item" type="us-types:durationStringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_NumberOfWeeksInThirdQuarter" name="NumberOfWeeksInThirdQuarter" nillable="true" substitutionGroup="xbrli:item" type="us-types:durationStringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_NumberOfWeeksIncludedInFourthQuarter" name="NumberOfWeeksIncludedInFourthQuarter" nillable="true" substitutionGroup="xbrli:item" type="us-types:durationStringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_NumberOfYearsInformationRequiredToComputeExpectedLife" name="NumberOfYearsInformationRequiredToComputeExpectedLife" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_OrganizationConsolidationAndPresentationAxis" name="OrganizationConsolidationAndPresentationAxis" nillable="true" substitutionGroup="xbrldt:dimensionItem" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_OrganizationConsolidationAndPresentationDomain" name="OrganizationConsolidationAndPresentationDomain" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_OrganizationConsolidationAndPresentationLineItems" name="OrganizationConsolidationAndPresentationLineItems" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_OrganizationConsolidationAndPresentationTable" name="OrganizationConsolidationAndPresentationTable" nillable="true" substitutionGroup="xbrldt:hypercubeItem" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_OtherComprehensiveIncomeChangeInUnrealizedGainsLossesNetOfTax" name="OtherComprehensiveIncomeChangeInUnrealizedGainsLossesNetOfTax" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="credit" xbrli:periodType="duration" />
  <xsd:element id="wfm_OtherPropertyAndEquipmentExpenditures" name="OtherPropertyAndEquipmentExpenditures" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="credit" xbrli:periodType="duration" />
  <xsd:element id="wfm_PercentageOfTotalNetLongLivedAssets" name="PercentageOfTotalNetLongLivedAssets" nillable="true" substitutionGroup="xbrli:item" type="num:percentItemType" xbrli:periodType="instant" />
  <xsd:element id="wfm_PercentageOfTotalSales" name="PercentageOfTotalSales" nillable="true" substitutionGroup="xbrli:item" type="num:percentItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_PeriodsOfHistoricalVolatilityUsedToComputeExpectedVolatility" name="PeriodsOfHistoricalVolatilityUsedToComputeExpectedVolatility" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_PreferredStockDividendsDeclaredOrSettled" name="PreferredStockDividendsDeclaredOrSettled" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="duration" />
  <xsd:element id="wfm_PreferredStockDividendsSharesDeclaredOrSettled" name="PreferredStockDividendsSharesDeclaredOrSettled" nillable="true" substitutionGroup="xbrli:item" type="xbrli:sharesItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_RangeOfExercisePricesFrom1112To2762Member" name="RangeOfExercisePricesFrom1112To2762Member" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_RangeOfExercisePricesFrom2803To4083Member" name="RangeOfExercisePricesFrom2803To4083Member" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_RangeOfExercisePricesFrom4105To6043Member" name="RangeOfExercisePricesFrom4105To6043Member" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_RangeOfExercisePricesFrom4105To6074Member" name="RangeOfExercisePricesFrom4105To6074Member" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_RangeOfExercisePricesFrom6249To6249Member" name="RangeOfExercisePricesFrom6249To6249Member" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_RangeOfExercisePricesFrom6681To6681Member" name="RangeOfExercisePricesFrom6681To6681Member" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_RangeOfExercisePricesFrom6896To7314Member" name="RangeOfExercisePricesFrom6896To7314Member" nillable="true" substitutionGroup="xbrli:item" type="nonnum:domainItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_ReclassificationAdjustmentsForAmountsIncludedInIncomeNetOfIncomeTaxes" name="ReclassificationAdjustmentsForAmountsIncludedInIncomeNetOfIncomeTaxes" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="credit" xbrli:periodType="duration" />
  <xsd:element id="wfm_RelocationStoreClosureAndLeaseTerminationCosts" name="RelocationStoreClosureAndLeaseTerminationCosts" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="duration" />
  <xsd:element id="wfm_RestrictedCashInvestments" name="RestrictedCashInvestments" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="instant" />
  <xsd:element abstract="true" id="wfm_RestrictedStockAbstract" name="RestrictedStockAbstract" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_RestructuringReserveGoodwillAdjustment" name="RestructuringReserveGoodwillAdjustment" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="duration" />
  <xsd:element id="wfm_RestructuringReservePeriodExpenseChangesInSubtenantIncomeEstimates" name="RestructuringReservePeriodExpenseChangesInSubtenantIncomeEstimates" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="duration" />
  <xsd:element id="wfm_RestructuringReserveSettledWithCashOngoingRentalPayments" name="RestructuringReserveSettledWithCashOngoingRentalPayments" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="duration" />
  <xsd:element id="wfm_RestructuringReserveSettledWithCashTerminationFees" name="RestructuringReserveSettledWithCashTerminationFees" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="duration" />
  <xsd:element id="wfm_ScheduleOfEntityWideInformationGeographicAreaLongLivedAssetsTableTextBlock" name="ScheduleOfEntityWideInformationGeographicAreaLongLivedAssetsTableTextBlock" nillable="true" substitutionGroup="xbrli:item" type="nonnum:textBlockItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_ScheduleOfEntityWideInformationGeographicAreaRevenueTableTextBlock" name="ScheduleOfEntityWideInformationGeographicAreaRevenueTableTextBlock" nillable="true" substitutionGroup="xbrli:item" type="nonnum:textBlockItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_ScheduleOfFiniteAndIndefiniteLivedIntangibleAssetsByMajorClassTable" name="ScheduleOfFiniteAndIndefiniteLivedIntangibleAssetsByMajorClassTable" nillable="true" substitutionGroup="xbrldt:hypercubeItem" type="xbrli:stringItemType" xbrli:periodType="duration" />
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  <xsd:element abstract="true" id="wfm_ScheduleOfFutureIntangibleAssetAmortizationTable" name="ScheduleOfFutureIntangibleAssetAmortizationTable" nillable="true" substitutionGroup="xbrldt:hypercubeItem" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_ScheduleOfInterestRatesOnDebtDisclosureTextBlock" name="ScheduleOfInterestRatesOnDebtDisclosureTextBlock" nillable="true" substitutionGroup="xbrli:item" type="nonnum:textBlockItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_ShareBasedCompensationArrangementByShareBasedPaymentAwardOptionsNonvestedNumber" name="ShareBasedCompensationArrangementByShareBasedPaymentAwardOptionsNonvestedNumber" nillable="true" substitutionGroup="xbrli:item" type="xbrli:sharesItemType" xbrli:periodType="instant" />
  <xsd:element id="wfm_ShareBasedCompensationArrangementOptionContractualTermMaximum" name="ShareBasedCompensationArrangementOptionContractualTermMaximum" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_ShareBasedCompensationArrangementOptionContractualTermMinimum" name="ShareBasedCompensationArrangementOptionContractualTermMinimum" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_ShareBasedCompensationBeginningOfOptionVestingPeriod" name="ShareBasedCompensationBeginningOfOptionVestingPeriod" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_ShareBasedCompensationNetOfTax" name="ShareBasedCompensationNetOfTax" nillable="true" substitutionGroup="xbrli:item" type="xbrli:monetaryItemType" xbrli:balance="debit" xbrli:periodType="duration" />
  <xsd:element id="wfm_ShortTermInvestmentAverageEffectiveMaturityPeriod" name="ShortTermInvestmentAverageEffectiveMaturityPeriod" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_StockIssuedDuringPeriodSharesRestrictedStockAwardNetOfForfeituresNotVested" name="StockIssuedDuringPeriodSharesRestrictedStockAwardNetOfForfeituresNotVested" nillable="true" substitutionGroup="xbrli:item" type="xbrli:sharesItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_TeamMemberPlanEligibilityMinimumAnnualServiceHours" name="TeamMemberPlanEligibilityMinimumAnnualServiceHours" nillable="true" substitutionGroup="xbrli:item" type="xbrli:integerItemType" xbrli:periodType="instant" />
  <xsd:element abstract="true" id="wfm_TeamMemberStockPurchasePlanAbstract" name="TeamMemberStockPurchasePlanAbstract" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element id="wfm_TermLoanRepaymentPeriod" name="TermLoanRepaymentPeriod" nillable="true" substitutionGroup="xbrli:item" type="xbrli:durationItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_TreasuryStockAbstract" name="TreasuryStockAbstract" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_WeightedAverageExercisePriceAbstract" name="WeightedAverageExercisePriceAbstract" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
  <xsd:element abstract="true" id="wfm_WeightedAverageRemainingContractualTermYearsAbstract" name="WeightedAverageRemainingContractualTermYearsAbstract" nillable="true" substitutionGroup="xbrli:item" type="xbrli:stringItemType" xbrli:periodType="duration" />
</xsd:schema>
